+ jX^RItRR.tRRlt]P!RRR7RRl4tR#) Ncytoscape_datacytoscape_graphcW8Xd\P!R4hR\VPP 44/pVP 4VR&VP 4VR&R.R./VR&VR,R,pVR,R,pVPP 4FwrgRVP4/pVPV4;'g \V4VR,R&WhR,R &VPV4;'g \V4VR,R &VPV4K VP 4'dVPR R 7Fp RVPV ^,,V ^,,V ^,,P4/pV ^,VR,R &V ^,VR,R&V ^,VR,R&VPV4K V#VP4Frp RVPV ^,,V ^,,P4/pV ^,VR,R &V ^,VR,R&VPV4Kt V#)aReturns data in Cytoscape JSON format (cyjs). Parameters ---------- G : NetworkX Graph The graph to convert to cytoscape format name : string A string which is mapped to the 'name' node element in cyjs format. Must not have the same value as `ident`. ident : string A string which is mapped to the 'id' node element in cyjs format. Must not have the same value as `name`. Returns ------- data: dict A dictionary with cyjs formatted data. Raises ------ NetworkXError If the values for `name` and `ident` are identical. See Also -------- cytoscape_graph: convert a dictionary in cyjs format to a graph References ---------- .. [1] Cytoscape user's manual: http://manual.cytoscape.org/en/stable/index.html Examples -------- >>> from pprint import pprint >>> G = nx.path_graph(2) >>> cyto_data = nx.cytoscape_data(G) >>> pprint(cyto_data, sort_dicts=False) {'data': [], 'directed': False, 'multigraph': False, 'elements': {'nodes': [{'data': {'id': '0', 'value': 0, 'name': '0'}}, {'data': {'id': '1', 'value': 1, 'name': '1'}}], 'edges': [{'data': {'source': 0, 'target': 1}}]}} The :mod:`json` package can be used to serialize the resulting data >>> import io, json >>> with io.StringIO() as fh: # replace io with `open(...)` to write to disk ... json.dump(cyto_data, fh) ... fh.seek(0) # doctest: +SKIP ... print(fh.getvalue()[:64]) # View the first 64 characters {"data": [], "directed": false, "multigraph": false, "elements": !name and ident must be different.datadirected multigraphnodesedgeselementsidvaluenameT)keyssourcetargetkey)nx NetworkXErrorlistgraphitems is_directed is_multigraphr copygetstrappendr adj) Gridentjsondatar r ijnes &&& h/home/luca/screen-checking/.venv/lib/python3.14/site-packages/networkx/readwrite/json_graph/cytoscape.pyrrsp }BCCQWW]]_-.H==?HZ__.H\#R"5HZ Z  )E Z  )E  QVVX %%,00#a&& $& 'EE$K113q6& & Q   d#AqtQqT*1Q405578A"#A$AfIh "#A$AfIh  tAfIe  LLO $ O AqtQqT*//12A"#A$AfIh "#A$AfIh  LLO  OT)graphs returns_graphcW8Xd\P!R4hVPR4pVPR4pV'd\P!4pM\P!4pV'dVP 4p\ VPR44VnVR,R,FpVR,P4pVR,R,pVR,PV4'dVR,PV4Wq&VR,PV4'dVR,PV4Wr&VPV4VPV,PV4K VR,R,FpVR,P4p VR,R ,p VR,R ,p V'dSVR,PR ^4p VPWV R 7VPWV 3,PV 4KVPW4VPW3,PV 4K V#) a Create a NetworkX graph from a dictionary in cytoscape JSON format. Parameters ---------- data : dict A dictionary of data conforming to cytoscape JSON format. name : string A string which is mapped to the 'name' node element in cyjs format. Must not have the same value as `ident`. ident : string A string which is mapped to the 'id' node element in cyjs format. Must not have the same value as `name`. Returns ------- graph : a NetworkX graph instance The `graph` can be an instance of `Graph`, `DiGraph`, `MultiGraph`, or `MultiDiGraph` depending on the input data. Raises ------ NetworkXError If the `name` and `ident` attributes are identical. See Also -------- cytoscape_data: convert a NetworkX graph to a dict in cyjs format References ---------- .. [1] Cytoscape user's manual: http://manual.cytoscape.org/en/stable/index.html Examples -------- >>> data_dict = { ... "data": [], ... "directed": False, ... "multigraph": False, ... "elements": { ... "nodes": [ ... {"data": {"id": "0", "value": 0, "name": "0"}}, ... {"data": {"id": "1", "value": 1, "name": "1"}}, ... ], ... "edges": [{"data": {"source": 0, "target": 1}}], ... }, ... } >>> G = nx.cytoscape_graph(data_dict) >>> G.name '' >>> G.nodes() NodeView((0, 1)) >>> G.nodes(data=True)[0] {'id': '0', 'value': 0, 'name': '0'} >>> G.edges(data=True) EdgeDataView([(0, 1, {'source': 0, 'target': 1})]) rr rrr r rr rrr)r)rrr MultiGraphGraph to_directeddictrradd_noder updateadd_edger ) rrr!r rrd node_datanode edge_datasourtargrs &&& r'rr_sx }BCC,'Jxx #H  !!#txx'(EK * g & &fINN$ y! V9==  immD1IO V9==   y}}U3I  t D  +'* g & &fINN$ y"y" F)--q)C NN43N / KKC ( / / : NN4 & KK # * *9 5' Lr()rr )networkxr__all__r _dispatchablerr(r'r=s= . /VrT2^3^r(